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si:ch73-70k4.1 si:ch73-70k4.1 [ Danio rerio (zebrafish) ]

Gene ID: 555663, updated on 4-Jan-2025

Summary

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Official Symbol
si:ch73-70k4.1provided by ZNC
Official Full Name
si:ch73-70k4.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3788
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-3788
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc54b08; wu:fc54b08
Summary
Predicted to enable ubiquitin binding activity. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:ch73-70k4.1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (17529120..17548226)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (17492768..17511481)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496333 Neighboring gene uncharacterized LOC137496334 Neighboring gene v-ski avian sarcoma viral oncogene homolog a Neighboring gene protein kinase C, zeta Neighboring gene uncharacterized LOC137496335 Neighboring gene uncharacterized LOC137496336

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein si:ch73-70k4.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    17529120..17548226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478395.2 → XP_021334070.1  uncharacterized protein si:ch73-70k4.1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QIV5
    Conserved Domains (3) summary
    pfam07174
    Location:52 → 161
    FAP; Fibronectin-attachment protein (FAP)
    pfam15750
    Location:539 → 571
    UBZ_FAAP20; Ubiquitin-binding zinc-finger
    cl25397
    Location:269 → 521
    AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394717.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    62859..87499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472032.2 → XP_021327707.1  uncharacterized protein si:ch73-70k4.1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9P9T0
    Conserved Domains (2) summary
    pfam15750
    Location:525 → 557
    UBZ_FAAP20; Ubiquitin-binding zinc-finger
    cl25397
    Location:270 → 507
    AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]

  2. XM_678237.8 → XP_683329.5  uncharacterized protein si:ch73-70k4.1 isoform X1

    UniProtKB/TrEMBL
    A0A8N7UUX0
    Conserved Domains (2) summary
    pfam15750
    Location:524 → 556
    UBZ_FAAP20; Ubiquitin-binding zinc-finger
    cl25397
    Location:251 → 506
    AidA; Type V secretory pathway, adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]
Nucleotide Protein
Heading Accession and Version

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