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chtf8 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) [ Danio rerio (zebrafish) ]

Gene ID: 555570, updated on 9-Dec-2024

Summary

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Official Symbol
chtf8provided by ZNC
Official Full Name
CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)provided by ZNC
Primary source
ZFIN:ZDB-GENE-050419-148
See related
Ensembl:ENSDARG00000069045 AllianceGenome:ZFIN:ZDB-GENE-050419-148
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158641; si:ch211-218c6.5
Summary
Predicted to enable DNA binding activity. Predicted to act upstream of or within DNA replication and mitotic sister chromatid cohesion. Predicted to be located in nucleus. Predicted to be part of Ctf18 RFC-like complex. Orthologous to human CHTF8 (chromosome transmission fidelity factor 8). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See chtf8 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (17021360..17024703)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (17032294..17035637)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 2 (tryptophan 5-monooxygenase) Neighboring gene TBC1 domain family, member 15 Neighboring gene hyaluronan synthase 3 Neighboring gene transport and golgi organization 6 homolog (Drosophila) Neighboring gene interleukin 17c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC158641

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Ctf18 RFC-like complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chromosome transmission fidelity protein 8 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044336.3 → NP_001037801.3  chromosome transmission fidelity protein 8 homolog

    See identical proteins and their annotated locations for NP_001037801.3

    Status: VALIDATED

    Source sequence(s)
    BX950194, EH538440, EH542341, EH569067
    UniProtKB/TrEMBL
    B7ZVM8, Q1LUE7
    Related
    ENSDARP00000090933.3, ENSDART00000100160.4
    Conserved Domains (1) summary
    pfam09696
    Location:50 → 116
    Ctf8; Ctf8

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    17021360..17024703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467656.2 → XP_021323331.1  chromosome transmission fidelity protein 8 homolog isoform X1

    UniProtKB/TrEMBL
    B7ZVM8, Q1LUE7
    Related
    ENSDARP00000152194.1, ENSDART00000189168.1
    Conserved Domains (1) summary
    pfam09696
    Location:50 → 116
    Ctf8; Ctf8

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395338.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    225896..229297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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