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szrd1 SUZ RNA binding domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 554231, updated on 9-Dec-2024

Summary

Official Symbol
szrd1provided by ZNC
Official Full Name
SUZ RNA binding domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-55
See related
Ensembl:ENSDARG00000056338 AllianceGenome:ZFIN:ZDB-GENE-050522-55
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb15h05; wu:fk86c07; zgc:109926
Summary
Orthologous to human SZRD1 (SUZ RNA binding domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See szrd1 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (24501951..24508166)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (24575410..24581625)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100535539 Neighboring gene transmembrane protein 82 Neighboring gene sulfotransferase family 1, cytosolic sulfotransferase 5 Neighboring gene ATPase cation transporting 13A2 Neighboring gene si:dkey-31b16.11

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC109926

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
SUZ RNA-binding domain-containing
Names
SUZ domain-containing protein 1
UPF0485 protein C1orf144 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030076.2NP_001025247.1  SUZ RNA-binding domain-containing

    See identical proteins and their annotated locations for NP_001025247.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095055
    UniProtKB/Swiss-Prot
    Q504E7
    Related
    ENSDARP00000073284.4, ENSDART00000078824.5
    Conserved Domains (2) summary
    pfam12752
    Location:60111
    SUZ; SUZ domain
    pfam12901
    Location:143159
    SUZ-C; SUZ-C motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    24501951..24508166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395151.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    134174..140389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)