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mrpl28 mitochondrial ribosomal protein L28 [ Danio rerio (zebrafish) ]

Gene ID: 554098, updated on 9-Dec-2024

Summary

Official Symbol
mrpl28provided by ZNC
Official Full Name
mitochondrial ribosomal protein L28provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-113
See related
Ensembl:ENSDARG00000057805 AllianceGenome:ZFIN:ZDB-GENE-050522-113
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fa96b11; zgc:110013
Summary
Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in lens; myotome; and solid lens vesicle. Orthologous to human MRPL28 (mitochondrial ribosomal protein L28). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See mrpl28 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (17128284..17138371, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (17192262..17202349, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene v-mos Moloney murine sarcoma viral oncogene homolog Neighboring gene v-rel avian reticuloendotheliosis viral oncogene homolog B Neighboring gene transfer RNA opal suppressor (anticodon UCA) Neighboring gene cullin 5a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
large ribosomal subunit protein bL28m

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024399.1NP_001019570.1  large ribosomal subunit protein bL28m

    See identical proteins and their annotated locations for NP_001019570.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095131
    UniProtKB/TrEMBL
    Q503Y2
    Related
    ENSDARP00000075223.3, ENSDART00000080777.4
    Conserved Domains (1) summary
    pfam00830
    Location:103136
    Ribosomal_L28; Ribosomal L28 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    17128284..17138371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394943.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    245155..255242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395321.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    92776..101784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)