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bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 [ Danio rerio (zebrafish) ]

Gene ID: 553529, updated on 9-Dec-2024

Summary

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Official Symbol
bloc1s3provided by ZNC
Official Full Name
biogenesis of lysosomal organelles complex-1, subunit 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-050913-10
See related
Ensembl:ENSDARG00000068828 AllianceGenome:ZFIN:ZDB-GENE-050913-10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:114034
Summary
Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 8. Orthologous to human BLOC1S3 (biogenesis of lysosomal organelles complex 1 subunit 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See bloc1s3 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (35082757..35101292, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (35236325..35243323, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene si:ch73-95l15.5 Neighboring gene rho guanine nucleotide exchange factor 28 Neighboring gene tektin like 1 Neighboring gene sestrin 3 Neighboring gene palmitoyl-protein thioesterase 2a, tandem duplicate 3 Neighboring gene palmitoyl-protein thioesterase 2a, tandem duplicate 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Genetic characterization and in vivo image analysis of novel zebrafish Danio rerio pigment mutants. Hsu CC, et al. J Fish Biol, 2013 May. PMID 23639161
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC114034

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
biogenesis of lysosome-related organelles complex 1 subunit 3
Names
hps8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025476.1 → NP_001020647.1  biogenesis of lysosome-related organelles complex 1 subunit 3

    See identical proteins and their annotated locations for NP_001020647.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097102
    UniProtKB/TrEMBL
    A0A2R8PY82, A0A8N7XJJ5, F1RA74, Q4V924
    Related
    ENSDARP00000100799.3, ENSDART00000109593.5
    Conserved Domains (1) summary
    pfam15753
    Location:8 → 189
    BLOC1S3; Biogenesis of lysosome-related organelles complex 1 subunit 3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    35082757..35101292 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157762.5 → XP_005157819.1  biogenesis of lysosome-related organelles complex 1 subunit 3 isoform X1

    See identical proteins and their annotated locations for XP_005157819.1

    UniProtKB/TrEMBL
    A0A2R8PY82, A0A8N7XJJ5, F1RA74, Q4V924
    Related
    ENSDARP00000090450.4, ENSDART00000099677.5
    Conserved Domains (1) summary
    pfam15753
    Location:8 → 189
    BLOC1S3; Biogenesis of lysosome-related organelles complex 1 subunit 3

RNA

  1. XR_011006339.1 RNA Sequence

  2. XR_011006342.1 RNA Sequence

  3. XR_011006340.1 RNA Sequence

  4. XR_011006341.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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