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LOC553492 transcription factor TFIIIB component B'' homolog [ Danio rerio (zebrafish) ]

Gene ID: 553492, updated on 12-Sep-2024

Summary

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Gene symbol
LOC553492
Gene description
transcription factor TFIIIB component B'' homolog
See related
Ensembl:ENSDARG00000117211
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC553492 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (43824016..43859143, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (43223873..43258995, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-204c21.1 Neighboring gene heat shock protein, alpha-crystallin-related, b11 Neighboring gene methylcrotonyl-CoA carboxylase subunit 2 Neighboring gene zgc:112966 Neighboring gene si:dkey-84j12.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
transcription factor TFIIIB component B'' homolog; uro-adherence factor A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    43824016..43859143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476612.2 → XP_021332287.1  uro-adherence factor A isoform X3

    UniProtKB/TrEMBL
    A0A8M9PLE0
    Conserved Domains (2) summary
    pfam15963
    Location:395 → 475
    Myb_DNA-bind_7; Myb DNA-binding like
    cl28033
    Location:14 → 246
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_021476611.2 → XP_021332286.1  transcription factor TFIIIB component B'' homolog isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q9Q0
    Conserved Domains (2) summary
    pfam15963
    Location:395 → 475
    Myb_DNA-bind_7; Myb DNA-binding like
    cl28033
    Location:14 → 246
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  3. XM_009301727.4 → XP_009300002.1  transcription factor TFIIIB component B'' homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M3AZV6
    Related
    ENSDART00000194543.1
    Conserved Domains (2) summary
    pfam09528
    Location:748 → 1191
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    pfam15963
    Location:395 → 478
    Myb_DNA-bind_7; Myb DNA-binding like
Nucleotide Protein Strain
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