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PRR34 PRR34 long non-coding RNA [ Homo sapiens (human) ]

Gene ID: 55267, updated on 17-Sep-2024

Summary

Official Symbol
PRR34provided by HGNC
Official Full Name
PRR34 long non-coding RNAprovided by HGNC
Primary source
HGNC:HGNC:25606
See related
AllianceGenome:HGNC:25606
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C22orf26
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See PRR34 in Genome Data Viewer
Location:
22q13.31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (46048531..46054225, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (46533116..46538806, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (46444411..46450105, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13892 Neighboring gene uncharacterized LOC124905134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46424640-46425193 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:46427338-46428112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46428113-46428886 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13894 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13895 Neighboring gene uncharacterized LOC124905136 Neighboring gene long intergenic non-protein coding RNA 899 Neighboring gene collagen alpha-1(III) chain-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13897 Neighboring gene PRR34 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19231 Neighboring gene long intergenic non-protein coding RNA 2939 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13898 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13899 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13900 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46467816-46468370 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:46468371-46468923 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46480369-46480940 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:46481213-46482412 Neighboring gene uncharacterized LOC112268288 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:46483852-46484461 Neighboring gene MIRLET7B host gene Neighboring gene microRNA 3619

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • proline rich 34
  • proline-rich protein 34

Clone Names

  • FLJ10945

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_165243.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL121672, AL929387

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    46048531..46054225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    46533116..46538806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)