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FAM86C1P family with sequence similarity 86 member C1, pseudogene [ Homo sapiens (human) ]

Gene ID: 55199, updated on 4-Jan-2025

Summary

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Official Symbol
FAM86C1Pprovided by HGNC
Official Full Name
family with sequence similarity 86 member C1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:25561
See related
Ensembl:ENSG00000158483 MIM:616124; AllianceGenome:HGNC:25561
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM86C; FAM86C1
Summary
Predicted to enable methyltransferase activity. Predicted to be involved in methylation. Part of protein-containing complex. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Ubiquitous expression in thyroid (RPKM 3.4), endometrium (RPKM 1.8) and 25 other tissues See more
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Genomic context

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See FAM86C1P in Genome Data Viewer
Location:
11q13.4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (71787514..71799661)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (71714420..71726582)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak1333 silencer Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 14 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:71445659-71446532 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 8 Neighboring gene XNDC1N-ZNF705EP-ALG1L9P readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3711 Neighboring gene ALG1 like 9, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3712 Neighboring gene zinc finger protein 705E, pseudogene Neighboring gene defensin beta 108B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity. Cloutier P, et al. PLoS Genet, 2013. PMID 23349634, Free PMC Article
  2. Towards a proteome-scale map of the human protein-protein interaction network. Rual JF, et al. Nature, 2005 Oct 20. PMID 16189514
  3. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
  4. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Other Names

  • family with sequence similarity 86, member C
  • protein FAM86C1

Clone Names

  • FLJ10661, FLJ27199, MGC45068

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of protein-containing complex IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    71787514..71799661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004643250.2 RNA Sequence

    Related
    ENST00000675931.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    71714420..71726582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082281.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001099653.1: Suppressed sequence

    Description
    NM_001099653.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  2. NM_018172.3: Suppressed sequence

    Description
    NM_018172.3: This RefSeq was removed because it is now thought that this gene is a pseudogene.

  3. NM_152563.2: Suppressed sequence

    Description
    NM_152563.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9NVL1.3 GenPept UniProtKB/Swiss-Prot:Q9NVL1

Gene LinkOut

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