ift22 intraflagellar transport 22 homolog (Chlamydomonas) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ift22provided by ZNC
Official Full Name: intraflagellar transport 22 homolog (Chlamydomonas)provided by ZNC
Primary source: ZFIN:ZDB-GENE-050417-439
See related: Ensembl:ENSDARG00000020822 AllianceGenome:ZFIN:ZDB-GENE-050417-439
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: rabl5; zgc:110645
Summary: Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be part of intraciliary transport particle B. Predicted to be active in endomembrane system. Orthologous to human IFT22 (intraflagellar transport 22). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (30702084..30704393, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (30101940..30104237, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IBA Inferred from Biological aspect of Ancestor more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in intracellular protein transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in endomembrane system	IBA Inferred from Biological aspect of Ancestor more info
part_of intraciliary transport particle B	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: intraflagellar transport protein 22 homolog

Names: RAB, member RAS oncogene family-like 5; rab-like protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017884.1 → NP_001017884.1 intraflagellar transport protein 22 homolog

See identical proteins and their annotated locations for NP_001017884.1

Status: PROVISIONAL

Source sequence(s)

BC092964

UniProtKB/Swiss-Prot

Q567Y6

Related

ENSDARP00000011140.4, ENSDART00000016709.6

Conserved Domains (2) summary

COG1100
Location:1 → 108

Gem1; GTPase SAR1 family domain [General function prediction only]

cl21455
Location:4 → 106

P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases