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utp23 UTP23 small subunit processome component [ Danio rerio (zebrafish) ]

Gene ID: 550514, updated on 9-Dec-2024

Summary

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Official Symbol
utp23provided by ZNC
Official Full Name
UTP23 small subunit processome componentprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-353
See related
Ensembl:ENSDARG00000105012 AllianceGenome:ZFIN:ZDB-GENE-050417-353
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc04b12; wu:fc04b12; zgc:110214
Summary
Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; lens placode; optic vesicle; presumptive neural retina; and segmental plate. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human UTP23 (UTP23 small subunit processome component). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See utp23 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (45962056..45967718)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (46371401..46377098)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene trichorhinophalangeal syndrome I Neighboring gene uncharacterized LOC137488553 Neighboring gene eukaryotic translation initiation factor 3, subunit H, b Neighboring gene si:ch211-153f2.3 Neighboring gene uncharacterized protein C20orf202-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Cis-regulatory control of mammalian Trps1 gene expression. Abrar M, et al. J Exp Zool B Mol Dev Evol, 2024 Mar. PMID 38369890,
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within rRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
rRNA-processing protein UTP23 homolog
Names
UTP23, small subunit (SSU) processome component, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017816.1 → NP_001017816.1  rRNA-processing protein UTP23 homolog

    See identical proteins and their annotated locations for NP_001017816.1

    Status: PROVISIONAL

    Source sequence(s)
    BC092802
    UniProtKB/TrEMBL
    Q568M1
    Conserved Domains (1) summary
    cd09866
    Location:2 → 148
    PIN_Fcf1-Utp23-H; PIN domain of rRNA-processing protein Fcf1- and Utp23-like homologs found in eukaryotes except fungi

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    45962056..45967718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215127.1 → XP_068071228.1  rRNA-processing protein UTP23 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0R4IA74, A0A8M3B3U5
    Related
    ENSDARP00000130967.1, ENSDART00000169710.2
Nucleotide Protein Strain
Heading Accession and Version

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