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fbxo16 F-box protein 16 [ Danio rerio (zebrafish) ]

Gene ID: 550375, updated on 2-Nov-2024

Summary

Official Symbol
fbxo16provided by ZNC
Official Full Name
F-box protein 16provided by ZNC
Primary source
ZFIN:ZDB-GENE-041015-747
See related
Ensembl:ENSDARG00000033949 AllianceGenome:ZFIN:ZDB-GENE-041015-747
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:112464; si:ch211-89p3.1
Summary
Is expressed in Kupffer's vesicle; hypothalamus; neural tube; and spinal cord. Orthologous to human FBXO16 (F-box protein 16). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See fbxo16 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (35208047..35254631)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (35344647..35351752)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene CDC42 binding protein kinase alpha (DMPK-like) b Neighboring gene lefty1 Neighboring gene frizzled class receptor 3a Neighboring gene family with sequence similarity 49 member A Neighboring gene visinin-like 1a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017680.2NP_001017680.2  F-box only protein 16

    Status: VALIDATED

    Source sequence(s)
    BX511007
    Related
    ENSDARP00000147018.1, ENSDART00000182470.1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    35208047..35254631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215440.1XP_068071541.1  F-box only protein 16 isoform X1

    Related
    ENSDARP00000152606.1, ENSDART00000184124.1