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syt13 synaptotagmin XIII [ Danio rerio (zebrafish) ]

Gene ID: 550345, updated on 11-Jan-2025

Summary

Official Symbol
syt13provided by ZNC
Official Full Name
synaptotagmin XIIIprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-135
See related
Ensembl:ENSDARG00000012306 AllianceGenome:ZFIN:ZDB-GENE-050417-135
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:112063
Summary
Is expressed in nervous system and trigeminal placode. Orthologous to human SYT13 (synaptotagmin 13). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See syt13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (38716061..38734245)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (38444803..38463597)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene CD59 molecule (CD59 blood group) a Neighboring gene F-box protein 3 Neighboring gene zinc finger protein 408 Neighboring gene coagulation factor II (thrombin)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017652.1NP_001017652.1  synaptotagmin-13

    See identical proteins and their annotated locations for NP_001017652.1

    Status: PROVISIONAL

    Source sequence(s)
    BC093178
    UniProtKB/TrEMBL
    Q567G8
    Related
    ENSDARP00000013748.5, ENSDART00000024590.8
    Conserved Domains (2) summary
    cd08407
    Location:284419
    C2B_Synaptotagmin-13; C2 domain second repeat present in Synaptotagmin 13
    cd08677
    Location:151273
    C2A_Synaptotagmin-13; C2 domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    38716061..38734245
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017356856.3XP_017212345.3  synaptotagmin-13 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z749