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ptcd2 pentatricopeptide repeat domain 2 [ Danio rerio (zebrafish) ]

Gene ID: 550275, updated on 4-Jan-2025

Summary

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Official Symbol
ptcd2provided by ZNC
Official Full Name
pentatricopeptide repeat domain 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-82
See related
Ensembl:ENSDARG00000035391 AllianceGenome:ZFIN:ZDB-GENE-050417-82
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:112401
Summary
Predicted to be involved in mitochondrion organization and regulation of mRNA processing. Predicted to act upstream of or within mRNA processing. Predicted to be active in mitochondrion. Orthologous to human PTCD2 (pentatricopeptide repeat domain 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See ptcd2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (35253456..35264517, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (34653303..34664401, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene transportin 1 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene microtubule-associated protein 1B Neighboring gene uncharacterized LOC110438655

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in mitochondrion organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of mRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of mRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 2, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017612.1 → NP_001017612.1  pentatricopeptide repeat-containing protein 2, mitochondrial

    See identical proteins and their annotated locations for NP_001017612.1

    Status: PROVISIONAL

    Source sequence(s)
    BC093286
    UniProtKB/Swiss-Prot
    Q566X6
    Related
    ENSDARP00000097803.1, ENSDART00000114981.3
    Conserved Domains (1) summary
    sd00004
    Location:130 → 152
    PPR; PPR repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    35253456..35264517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171851.5 → XP_005171908.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8M2BJ53, F1QQL7
    Conserved Domains (1) summary
    sd00004
    Location:130 → 152
    PPR; PPR repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394591.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    94248..102962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q566X6.1 GenPept UniProtKB/Swiss-Prot:Q566X6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials