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lmbrd2a LMBR1 domain containing 2a [ Danio rerio (zebrafish) ]

Gene ID: 550238, updated on 4-Jan-2025

Summary

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Official Symbol
lmbrd2aprovided by ZNC
Official Full Name
LMBR1 domain containing 2aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-32
See related
Ensembl:ENSDARG00000099566 AllianceGenome:ZFIN:ZDB-GENE-050417-32
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
lmbrd2; zgc:110095
Summary
Predicted to be located in membrane. Is expressed in several structures, including alar plate midbrain region; hatching gland; otic placode; polster; and solid lens vesicle. Orthologous to human LMBRD2 (LMBR1 domain containing 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See lmbrd2a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (8194848..8238771)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (7691626..7733078)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene NIPBL cohesin loading factor a Neighboring gene solute carrier family 1 member 3a Neighboring gene family with sequence similarity 111.2 Neighboring gene family with sequence similarity 111.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
G-protein coupled receptor-associated protein LMBRD2a
Names
LMBR1 domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017576.2 → NP_001017576.2  G-protein coupled receptor-associated protein LMBRD2a isoform 2

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    CU469496
    UniProtKB/TrEMBL
    A0A286YBR1, A0A8M1N593
    Related
    ENSDARP00000144642.2, ENSDART00000174564.2

  2. NM_001327914.1 → NP_001314843.1  G-protein coupled receptor-associated protein LMBRD2a isoform 1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    CU469496, FP017293
    UniProtKB/TrEMBL
    A0A0R4IWA8, A0A8M1P374
    Related
    ENSDARP00000140984.2, ENSDART00000161261.2
    Conserved Domains (1) summary
    pfam04791
    Location:14 → 547
    LMBR1; LMBR1-like membrane protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    8194848..8238771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476149.2 → XP_021331824.1  G-protein coupled receptor-associated protein LMBRD2a isoform X1

    UniProtKB/TrEMBL
    A0A8M3B9B9
    Conserved Domains (1) summary
    pfam04791
    Location:14 → 550
    LMBR1; LMBR1-like membrane protein

  2. XM_009301180.4 → XP_009299455.1  G-protein coupled receptor-associated protein LMBRD2a isoform X1

    UniProtKB/TrEMBL
    A0A8M3B9B9
    Conserved Domains (1) summary
    pfam04791
    Location:14 → 550
    LMBR1; LMBR1-like membrane protein

  3. XM_068221170.1 → XP_068077271.1  G-protein coupled receptor-associated protein LMBRD2a isoform X2

    UniProtKB/TrEMBL
    A0A8M9QDX3
Nucleotide Protein Strain
Heading Accession and Version

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