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PRX2 cationic peroxidase 2 [ Glycine max (soybean) ]

Gene ID: 547513, updated on 7-Dec-2023

Summary

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Gene symbol
PRX2
Gene description
cationic peroxidase 2
Locus tag
GLYMA_17G013600v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See PRX2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 17 NC_038253.2 (1034667..1036905)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 17 NC_038253.1 (1034720..1036958)

Chromosome 17 - NC_038253.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100811239 Neighboring gene tRNA wybutosine-synthesizing protein 2/3/4-like Neighboring gene uncharacterized LOC102665389 Neighboring gene calcium-dependent protein kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Localization of peroxidase mRNAs in soybean seeds by in situ hybridization. Gijzen M, et al. Plant Mol Biol, 1999 Sep. PMID 10561068
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cationic peroxidase 2
Names
class III plant peroxidase
NP_001237601.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001250672.2 → NP_001237601.1  cationic peroxidase 2 precursor

    See identical proteins and their annotated locations for NP_001237601.1

    Status: PROVISIONAL

    Source sequence(s)
    BT099403
    UniProtKB/TrEMBL
    A0A0R0J8T7, O64970
    Conserved Domains (1) summary
    cd00693
    Location:28 → 323
    secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038253.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1034667..1036905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases