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Zfp108 zinc finger protein 108 [ Mus musculus (house mouse) ]

Gene ID: 54678, updated on 27-Nov-2024

Summary

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Official Symbol
Zfp108provided by MGI
Official Full Name
zinc finger protein 108provided by MGI
Primary source
MGI:MGI:1891198
See related
Ensembl:ENSMUSG00000030486 AllianceGenome:MGI:1891198
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in central nervous system; eye; genitourinary system; hepatic primordium; and liver. Orthologous to human ZNF235 (zinc finger protein 235). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E18 (RPKM 1.6), cerebellum adult (RPKM 1.5) and 28 other tissues See more
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Genomic context

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See Zfp108 in Genome Data Viewer
Location:
7 A3; 7 10.27 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (23954142..23961870)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (24254726..24262445)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 111 Neighboring gene zinc finger protein 109 Neighboring gene zinc finger protein 93 Neighboring gene STARR-seq mESC enhancer starr_18256 Neighboring gene predicted gene, 51471 Neighboring gene zinc finger protein 51 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters. Shannon M, et al. Genome Res, 2003 Jun. PMID 12743021, Free PMC Article
  2. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
  4. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
zinc finger protein 108

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018791.2 → NP_061261.2  zinc finger protein 108

    See identical proteins and their annotated locations for NP_061261.2

    Status: VALIDATED

    Source sequence(s)
    AK032355, BC100339
    Consensus CDS
    CCDS85236.1
    UniProtKB/TrEMBL
    Q8CCP6
    Related
    ENSMUSP00000145928.2, ENSMUST00000206777.2
    Conserved Domains (3) summary
    COG5048
    Location:283 → 636
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:395 → 415
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 48
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    23954142..23961870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322372.3 → XP_017177861.1  zinc finger protein 108 isoform X1

    UniProtKB/TrEMBL
    Q8CCP6
    Related
    ENSMUSP00000145844.2, ENSMUST00000205982.2
    Conserved Domains (3) summary
    COG5048
    Location:283 → 636
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:395 → 415
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 48
    KRAB; KRAB box

  2. XM_017322373.3 → XP_017177862.1  zinc finger protein 108 isoform X1

    UniProtKB/TrEMBL
    Q8CCP6
    Conserved Domains (3) summary
    COG5048
    Location:283 → 636
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:395 → 415
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 48
    KRAB; KRAB box

  3. XM_017322374.2 → XP_017177863.1  zinc finger protein 108 isoform X1

    UniProtKB/TrEMBL
    Q8CCP6
    Conserved Domains (3) summary
    COG5048
    Location:283 → 636
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:395 → 415
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 48
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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