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Gm5784 predicted gene 5784 [ Mus musculus (house mouse) ]

Gene ID: 544848, updated on 27-Nov-2024

Summary

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Official Symbol
Gm5784provided by MGI
Official Full Name
predicted gene 5784provided by MGI
Primary source
MGI:MGI:3647969
See related
AllianceGenome:MGI:3647969
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm29737; EG544848
Expression
Ubiquitous expression in adrenal adult (RPKM 1.2), CNS E18 (RPKM 1.2) and 24 other tissues See more
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Genomic context

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See Gm5784 in Genome Data Viewer
Location:
12; 12 A1.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (19437582..19485163)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (19387643..19435162)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_31694 Neighboring gene predicted gene 5953 Neighboring gene hippocalcin-like 1 pseudogene Neighboring gene predicted gene 3973 Neighboring gene STARR-seq mESC enhancer starr_31695 Neighboring gene predicted gene 9257 Neighboring gene STARR-seq mESC enhancer starr_31696

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Role of KRAB-ZFPs in Transposable Element Repression and Mammalian Evolution. Yang P, et al. Trends Genet, 2017 Nov. PMID 28935117, Free PMC Article
  2. KRAB zinc finger proteins. Ecco G, et al. Development, 2017 Aug 1. PMID 28765213, Free PMC Article
  3. Evolution of KRAB-containing zinc finger proteins and their roles in species evolution. Wang J, et al. Yi Chuan, 2016 Nov 20. PMID 27867147
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC544848

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001384145.1 → NP_001371074.1  uncharacterized protein LOC544848 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC124739
    Conserved Domains (3) summary
    COG5048
    Location:198 → 603
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:342 → 362
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:45 → 85
    KRAB; KRAB box

  2. NM_001384146.1 → NP_001371075.1  uncharacterized protein LOC544848 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC124739
    Conserved Domains (1) summary
    pfam01352
    Location:45 → 85
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    19437582..19485163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036157531.1 → XP_036013424.1  uncharacterized protein LOC544848 isoform X2

    UniProtKB/TrEMBL
    Q9CYR1
    Conserved Domains (1) summary
    pfam01352
    Location:45 → 85
    KRAB; KRAB box

  2. XM_035096944.2 → XP_034952835.1  uncharacterized protein LOC544848 isoform X1

    Conserved Domains (1) summary
    pfam01352
    Location:45 → 85
    KRAB; KRAB box

  3. XM_036157532.1 → XP_036013425.1  uncharacterized protein LOC544848 isoform X3

  4. XM_036157533.1 → XP_036013426.1  uncharacterized protein LOC544848 isoform X4

  5. XM_036157534.1 → XP_036013427.1  uncharacterized protein LOC544848 isoform X5

  6. XM_036157536.1 → XP_036013429.1  uncharacterized protein LOC544848 isoform X7

  7. XM_036157535.1 → XP_036013428.1  uncharacterized protein LOC544848 isoform X6

Nucleotide Protein Strain
Heading Accession and Version

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