ogna osteoglycin, paralog a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ognaprovided by ZNC
Official Full Name: osteoglycin, paralog aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050208-650
See related: Ensembl:ENSDARG00000044132 AllianceGenome:ZFIN:ZDB-GENE-050208-650
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ogn; zgc:113545; si:ch211-103f16.4
Summary: Predicted to enable growth factor activity. Predicted to be involved in articular cartilage development and bone development. Predicted to be active in extracellular matrix. Is expressed in apical ectodermal ridge; fin fold pectoral fin bud; pharynx; skeletal system; and trigeminal placode. Orthologous to human OGN (osteoglycin). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (10454603..10459880, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (10424921..10430198, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables growth factor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in articular cartilage development	IBA Inferred from Biological aspect of Ancestor more info
involved_in bone development	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in extracellular matrix	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: osteoglycin, paralog a

Names: osteoglycin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001013570.2 → NP_001013588.1 osteoglycin, paralog a precursor

See identical proteins and their annotated locations for NP_001013588.1

Status: PROVISIONAL

Source sequence(s)

BC090507

UniProtKB/TrEMBL

Q5BLC1

Related

ENSDARP00000064800.5, ENSDART00000064801.6

Conserved Domains (3) summary

cd00116
Location:156 → 249

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

sd00033
Location:118 → 139

LRR_RI; leucine-rich repeat [structural motif]

pfam13855
Location:139 → 220

LRR_8; Leucine rich repeat