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ilrun inflammation and lipid regulator with UBA-like and NBR1-like domains [ Danio rerio (zebrafish) ]

Gene ID: 541415, updated on 9-Dec-2024

Summary

Official Symbol
ilrunprovided by ZNC
Official Full Name
inflammation and lipid regulator with UBA-like and NBR1-like domainsprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050320-117
See related
Ensembl:ENSDARG00000078075 AllianceGenome:ZFIN:ZDB-GENE-050320-117
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101577
Summary
Predicted to enable ubiquitin binding activity. Predicted to be involved in macroautophagy. Predicted to act upstream of or within innate immune response. Predicted to be located in cytoplasm and nucleus. Predicted to be active in phagophore assembly site. Orthologous to human ILRUN (inflammation and lipid regulator with UBA-like and NBR1-like domains). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See ilrun in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (54325008..54348612, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (54316900..54340511, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene protein kinase C and casein kinase substrate in neurons 1b Neighboring gene SAM pointed domain containing ETS transcription factor Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1Ab Neighboring gene small nuclear ribonucleoprotein polypeptide C

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ubiquitin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within immune system process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within innate immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in macroautophagy IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
is_active_in phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
protein ILRUN
Names
uncharacterized protein C6orf106 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013542.2NP_001013560.2  protein ILRUN

    Status: VALIDATED

    Source sequence(s)
    CU856151
    UniProtKB/Swiss-Prot
    Q5BL31
    UniProtKB/TrEMBL
    A0A8M3B3Q8, F1R890
    Related
    ENSDARP00000129179.1, ENSDART00000156501.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    54325008..54348612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_011015813.1 RNA Sequence