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LOC511158 lipocalin-1 [ Bos taurus (domestic cattle) ]

Gene ID: 511158, updated on 27-Dec-2024

Summary

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Gene symbol
LOC511158
Gene description
lipocalin-1
See related
BGD:BT19265; Ensembl:ENSBTAG00000009599
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
LCN1
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Genomic context

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See LOC511158 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (105841418..105844764, complement)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene piercer of microtubule wall 1 Neighboring gene mitochondrial ribosomal protein S2 Neighboring gene lipocalin 10 Neighboring gene uncharacterized LOC132346653 Neighboring gene lipocalin 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lipocalin-1
Names
lipocalin 1 (tear prealbumin)
lipocalin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    105841418..105844764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010810643.3 → XP_010808945.1  lipocalin-1

    See identical proteins and their annotated locations for XP_010808945.1

    UniProtKB/TrEMBL
    A0A3Q1N2R6
    Related
    ENSBTAP00000063595.2, ENSBTAT00000072177.2
    Conserved Domains (1) summary
    pfam00061
    Location:30 → 166
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

  2. XM_002691709.5 → XP_002691755.1  lipocalin-1

    See identical proteins and their annotated locations for XP_002691755.1

    UniProtKB/TrEMBL
    A0A3Q1N2R6
    Conserved Domains (1) summary
    pfam00061
    Location:30 → 166
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family
Nucleotide Protein Strain
Heading Accession and Version

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