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Gprin3 GPRIN family member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502784, updated on 9-Dec-2024

Summary

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Official Symbol
Gprin3provided by RGD
Official Full Name
GPRIN family member 3provided by RGD
Primary source
RGD:1565690
See related
EnsemblRapid:ENSRNOG00000023657 AllianceGenome:RGD:1565690
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565690
Summary
Predicted to be involved in neuron projection development. Predicted to be active in plasma membrane. Orthologous to human GPRIN3 (GPRIN family member 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Liver (RPKM 102.6), Heart (RPKM 81.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Gprin3 in Genome Data Viewer
Location:
4q24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (89902198..89987496, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (88572062..88657369, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (89690678..89778302, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA binding domain containing 5, pseudogene 1 Neighboring gene tigger transposable element derived 2 Neighboring gene sentrin-specific protease 6-like Neighboring gene SUMO specific peptidase 6, pseudogene 1 Neighboring gene uncharacterized LOC134486587 Neighboring gene uncharacterized LOC108350862 Neighboring gene uncharacterized LOC120102288

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
G protein-regulated inducer of neurite outgrowth 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398918.1 → NP_001385847.1  G protein-regulated inducer of neurite outgrowth 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A8I6A8S7, A6K147, D3ZF21
    Related
    ENSRNOP00000087851.1, ENSRNOT00000104119.2
    Conserved Domains (1) summary
    pfam15235
    Location:636 → 757
    GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus

  2. NM_001398919.1 → NP_001385848.1  G protein-regulated inducer of neurite outgrowth 3

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    UniProtKB/TrEMBL
    A0A8I6A8S7, A6K147, D3ZF21
    Related
    ENSRNOP00000055378.5, ENSRNOT00000039316.7
    Conserved Domains (1) summary
    pfam15235
    Location:636 → 757
    GRIN_C; G protein-regulated inducer of neurite outgrowth C-terminus

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    89902198..89987496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Chemical Information
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