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geko geko [ Drosophila melanogaster (fruit fly) ]

Gene ID: 50263, updated on 9-Dec-2024

Summary

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Official Symbol
gekoprovided by FlyBase
Official Full Name
gekoprovided by FlyBase
Primary source
FLYBASE:FBgn0020300
Locus tag
Dmel_CG13695
See related
AllianceGenome:FB:FBgn0020300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE30284; CG13695; CG13696; CT33153; Dmel\CG13695; Geko; gk
Summary
Involved in behavioral response to ethanol and sensory perception of smell. Is expressed in several structures, including adult tracheal system; amnioserosa anlage; epithelium; gut section; and organism subdivision. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See geko in Genome Data Viewer
Location:
75B11-75B12; 3-45 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (18139402..18145418)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (18132502..18138518)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Cytochrome P450 312a1 Neighboring gene long non-coding RNA:CR44669 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Geko, a novel gene involved in olfaction in Drosophila melanogaster. Shiraiwa T, et al. J Neurogenet, 2000 Sep. PMID 10992166
  2. The role of lineage-specific gene family expansion in the evolution of eukaryotes. Lespinet O, et al. Genome Res, 2002 Jul. PMID 12097341, Free PMC Article
  3. Genome-wide transcription analysis of clinal genetic variation in Drosophila. Chen Y, et al. PLoS One, 2012. PMID 22514645, Free PMC Article
  4. Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression. Combs PA, et al. PLoS One, 2013. PMID 23951250, Free PMC Article
  5. Phenotypic plasticity and genotype by environment interaction for olfactory behavior in Drosophila melanogaster. Sambandan D, et al. Genetics, 2008 Jun. PMID 18505870, Free PMC Article

See all (36) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in behavioral response to ethanol IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in sensory perception of smell IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
geko
Names
CG13695-PB
geko-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    18139402..18145418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_080241.3 → NP_524980.1  geko [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_524980.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GNN9, Q9VVN7
    Related
    FBpp0074892
    Conserved Domains (1) summary
    cl11657
    Location:116 → 193
    DM4_12; DM4/DM12 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VVN7 Q9VVN7

Gene LinkOut

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