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FBD-like domain family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 5008309, updated on 18-Sep-2024

Summary

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Official Full Name
FBD-like domain family protein
Primary source
TAIR:AT5G56452
Locus tag
AT5G56452
See related
Araport:AT5G56452
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (22860450..22861818, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene Protein kinase superfamily protein Neighboring gene FAD-dependent oxidoreductase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001125973.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
FBD-like domain family protein
NP_001078757.1
  • FBD-like domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G50710.1); Has 363 Blast hits to 356 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 363; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_001119445.1
  • FBD-like domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G50710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22860450..22861818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085288.2 → NP_001078757.1  FBD-like domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078757.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0ME44, Q1G371
    Conserved Domains (2) summary
    sd00032
    Location:100 → 125
    LRR_2; leucine-rich repeat [structural motif]
    pfam08387
    Location:150 → 194
    FBD; FBD

  2. NM_001125973.1 → NP_001119445.1  FBD-like domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119445.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0ME44, B3H6N2
    Conserved Domains (2) summary
    sd00032
    Location:99 → 124
    LRR_2; leucine-rich repeat [structural motif]
    pfam08387
    Location:149 → 193
    FBD; FBD
Nucleotide Protein
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