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inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 5008239, updated on 18-Sep-2024

Summary

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Official Full Name
inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784)
Primary source
TAIR:AT5G34908
Locus tag
AT5G34908
See related
Araport:AT5G34908
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes a ECA1 gametogenesis related family protein
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (13225067..13225315)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ECA1 gametogenesis family protein (DUF784) Neighboring gene miscRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784)
NP_001078635.1
  • LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF784) (TAIR:AT5G34905.1); Has 112 Blast hits to 112 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 112; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    13225067..13225315
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085166.1 → NP_001078635.1  inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein, putative (DUF784) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078635.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H7M5
    Conserved Domains (1) summary
    cl05275
    Location:1 → 82
    Prolamin_like; Prolamin-like
Nucleotide Protein
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