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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 5008149, updated on 11-Sep-2024

Summary

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Primary source
TAIR:AT4G20362
Locus tag
AT4G20362
See related
Araport:AT4G20362
Gene type
ncRNA
RNA name
lncRNA
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Natural antisense transcript overlaps with AT4G20360~Potential natural antisense gene, locus overlaps with AT4G20360
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (10989908..10992242, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene oxidoreductase Neighboring gene RAB GTPase homolog E1B Neighboring gene pseudo Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Subtilase-mediated biogenesis of the expanded family of SERINE RICH ENDOGENOUS PEPTIDES. Yang H, et al. Nat Plants, 2023 Dec. PMID 38049516
  2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in reactive oxygen species biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10989908..10992242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_142340.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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