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ribonuclease H2 subunit B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 5008148, updated on 18-Sep-2024

Summary

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Official Full Name
ribonuclease H2 subunit B
Primary source
TAIR:AT4G20325
Locus tag
AT4G20325
See related
Araport:AT4G20325
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (10979741..10982646)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Peptidase M50 family protein Neighboring gene CTP synthase family protein Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene oxidoreductase Neighboring gene ncRNA Neighboring gene RAB GTPase homolog E1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Lack of RNase H2 activity rescues HU-sensitivity of WEE1 deficient plants. Eekhout T, et al. Plant Signal Behav, 2015. PMID 25875879, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084943.2
NM_001125548.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of ribonuclease H2 complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribonuclease H2 subunit B
NP_001078412.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001119020.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10979741..10982646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084943.2 → NP_001078412.2  ribonuclease H2 subunit B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078412.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XU73, A8MRG8
    Conserved Domains (1) summary
    cd09270
    Location:15 → 185
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids

  2. NM_001125548.1 → NP_001119020.1  ribonuclease H2 subunit B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119020.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B6EUC5
    Conserved Domains (1) summary
    cd09270
    Location:15 → 162
    RNase_H2-B; Ribonuclease H2-B is a subunit of the eukaryotic RNase H complex which cleaves RNA-DNA hybrids
Nucleotide Protein
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