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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 5008015, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT3G20395
Locus tag
AT3G20395
See related
Araport:AT3G20395
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (7111934..7113899, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRAF-like family protein Neighboring gene TRAF-like family protein Neighboring gene endoribonuclease L-PSP family protein Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene calmodulin-domain protein kinase 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084725.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001078194.1
  • RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G66070.1); Has 9570 Blast hits to 9551 proteins in 280 species: Archae - 0; Bacteria - 6; Metazoa - 2563; Fungi - 715; Plants - 4921; Viruses - 21; Other Eukaryotes - 1344 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7111934..7113899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084725.2 → NP_001078194.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078194.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0MDS1, Q1G3M1
    Conserved Domains (2) summary
    pfam12678
    Location:171 → 213
    zf-rbx1; RING-H2 zinc finger
    pfam13639
    Location:170 → 213
    zf-RING_2; Ring finger domain
Nucleotide Protein
Heading Accession and Version

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