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ECA1 gametogenesis related family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 5007775, updated on 18-Sep-2024

Summary

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Official Full Name
ECA1 gametogenesis related family protein
Primary source
TAIR:AT1G44224
Locus tag
AT1G44224
See related
Araport:AT1G44224
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes a ECA1 gametogenesis related family protein
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (16820929..16821823, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene Aldolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084209.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ECA1 gametogenesis related family protein
NP_001077678.1
  • ECA1 gametogenesis related family protein; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G50570.1); Has 7891 Blast hits to 2246 proteins in 385 species: Archae - 0; Bacteria - 2651; Metazoa - 2792; Fungi - 510; Plants - 409; Viruses - 97; Other Eukaryotes - 1432 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    16820929..16821823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084209.2 → NP_001077678.1  ECA1 gametogenesis related family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077678.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WJF3, Q570Y0
    Conserved Domains (1) summary
    PHA02030
    Location:71 → 145
    PHA02030; hypothetical protein
Nucleotide Protein
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