Lbhd2 LBH domain containing 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Lbhd2provided by RGD
Official Full Name: LBH domain containing 2provided by RGD
Primary source: RGD:1560608
See related: EnsemblRapid:ENSRNOG00000043137 AllianceGenome:RGD:1560608
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1560608
Summary: Orthologous to human LBHD2 (LBH domain containing 2). [provided by Alliance of Genome Resources, Jan 2025]
Expression: Biased expression in Spleen (RPKM 17.9), Brain (RPKM 16.5) and 5 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 6q32

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	6	NC_086024.1 (136263383..136268422)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	6	NC_051341.1 (130442388..130447229)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	6	NC_005105.4 (135856218..135861059)

Chromosome 6 - NC_086024.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: LBH domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109280.1 → NP_001102750.1 LBH domain-containing protein 2

See identical proteins and their annotated locations for NP_001102750.1

Status: VALIDATED

Source sequence(s)

CH474034

UniProtKB/TrEMBL

A6KBQ6, D3ZC31

Related

ENSRNOP00000062808.2, ENSRNOT00000066715.3

Conserved Domains (1) summary

pfam15317
Location:37 → 61

Lbh; Cardiac transcription factor regulator, Developmental protein
NM_001434076.1 → NP_001421005.1 LBH domain-containing protein 2

Status: VALIDATED

Source sequence(s)

JAXUCZ010000006

UniProtKB/TrEMBL

A6KBQ6, D3ZC31

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086024.1 Reference GRCr8

Range

136263383..136268422

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063262342.1 → XP_063118412.1 LBH domain-containing protein 2 isoform X1
XM_063262344.1 → XP_063118414.1 LBH domain-containing protein 2 isoform X1

UniProtKB/TrEMBL

A6KBQ6, D3ZC31
XM_063262345.1 → XP_063118415.1 LBH domain-containing protein 2 isoform X1

UniProtKB/TrEMBL

A6KBQ6, D3ZC31