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OSTLU_28572 hypothetical protein [ Ostreococcus lucimarinus CCE9901 ]

Gene ID: 5006491, updated on 21-Dec-2023

Summary

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Gene symbol
OSTLU_28572
Gene description
hypothetical protein
Locus tag
OSTLU_28572
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Ostreococcus lucimarinus CCE9901 (strain: CCE9901)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Genomic context

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See OSTLU_28572 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
1
Sequence:
Chromosome: 19; NC_009373.1 (96881..98080)

Chromosome 19 - NC_009373.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009373.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Palenik B, et al. Proc Natl Acad Sci U S A, 2007 May 1. PMID 17460045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009373.1 Reference assembly

    Range
    96881..98080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001422353.1 → XP_001422390.1  predicted protein [Ostreococcus lucimarinus CCE9901]

    See identical proteins and their annotated locations for XP_001422390.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A4SAH5
    Conserved Domains (2) summary
    cd02570
    Location:20 → 272
    PseudoU_synth_EcTruA; Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA
    PRK00021
    Location:18 → 272
    truA; tRNA pseudouridine synthase A; Validated
Nucleotide Protein
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