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Ccdc17 coiled-coil domain containing 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500528, updated on 4-Jan-2025

Summary

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Official Symbol
Ccdc17provided by RGD
Official Full Name
coiled-coil domain containing 17provided by RGD
Primary source
RGD:1598211
See related
EnsemblRapid:ENSRNOG00000023216 AllianceGenome:RGD:1598211
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human CCDC17 (coiled-coil domain containing 17). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Lung (RPKM 152.8), Kidney (RPKM 59.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc17 in Genome Data Viewer
Location:
5q35
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (135288799..135293339)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (130051158..130056676)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (135440276..135445794)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7a, pseudogene 20 Neighboring gene intracisternal A particle-promoted polypeptide Neighboring gene transmembrane protein 69 Neighboring gene GC-rich promoter binding protein 1-like 1 Neighboring gene nuclear autoantigenic sperm protein Neighboring gene U6 spliceosomal RNA Neighboring gene aldo-keto reductase family 1 member A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Impact of Genetic Variation in MicroRNA-binding Site on Susceptibility to Colorectal Cancer. Kang BW, et al. Anticancer Res, 2016 Jul. PMID 27354594
  2. Gene expression analysis in response to lung toxicants: I. Sequencing and microarray development. Shultz MA, et al. Am J Respir Cell Mol Biol, 2004 Mar. PMID 12947022
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014067.2 → NP_001014089.2  coiled-coil domain-containing protein 17

    Status: PROVISIONAL

    Source sequence(s)
    AA926261, BI292365, CF114603, CK476945, CO385240, CO398762
    UniProtKB/TrEMBL
    A0A0G2KAL0
    Conserved Domains (1) summary
    PRK03918
    Location:38 → 271
    PRK03918; chromosome segregation protein; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    135288799..135293339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006238703.4 → XP_006238765.1  coiled-coil domain-containing protein 17 isoform X3

    UniProtKB/TrEMBL
    A0A0G2KAL0
    Conserved Domains (1) summary
    PRK03918
    Location:80 → 312
    PRK03918; chromosome segregation protein; Provisional

  2. XM_006238705.4 → XP_006238767.1  coiled-coil domain-containing protein 17 isoform X7

    UniProtKB/TrEMBL
    A0A0G2KAL0
    Conserved Domains (1) summary
    PRK03918
    Location:80 → 312
    PRK03918; chromosome segregation protein; Provisional

  3. XM_063288238.1 → XP_063144308.1  coiled-coil domain-containing protein 17 isoform X9

  4. XM_063288239.1 → XP_063144309.1  coiled-coil domain-containing protein 17 isoform X10

  5. XM_006238707.4 → XP_006238769.1  coiled-coil domain-containing protein 17 isoform X15

    UniProtKB/TrEMBL
    A0A0G2KAL0
    Related
    ENSRNOP00000075436.2, ENSRNOT00000090852.3
    Conserved Domains (1) summary
    COG1196
    Location:69 → 291
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  6. XM_063288240.1 → XP_063144310.1  coiled-coil domain-containing protein 17 isoform X11

  7. XM_063288241.1 → XP_063144311.1  coiled-coil domain-containing protein 17 isoform X13

  8. XM_039110594.2 → XP_038966522.1  coiled-coil domain-containing protein 17 isoform X14

  9. XM_006238702.4 → XP_006238764.1  coiled-coil domain-containing protein 17 isoform X1

    UniProtKB/TrEMBL
    A0A0G2KAL0
    Conserved Domains (1) summary
    PRK03918
    Location:80 → 312
    PRK03918; chromosome segregation protein; Provisional

  10. XM_006238706.4 → XP_006238768.1  coiled-coil domain-containing protein 17 isoform X8

    Conserved Domains (1) summary
    PRK03918
    Location:80 → 177
    PRK03918; chromosome segregation protein; Provisional

  11. XM_039110589.2 → XP_038966517.1  coiled-coil domain-containing protein 17 isoform X2

    UniProtKB/TrEMBL
    A0A0G2KAL0

  12. XM_006238704.4 → XP_006238766.1  coiled-coil domain-containing protein 17 isoform X4

    UniProtKB/TrEMBL
    A0A0G2KAL0, D3ZMQ6
    Related
    ENSRNOP00000034089.5, ENSRNOT00000034464.6
    Conserved Domains (1) summary
    COG1196
    Location:69 → 291
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  13. XM_039110590.2 → XP_038966518.1  coiled-coil domain-containing protein 17 isoform X5

    UniProtKB/TrEMBL
    A0A0G2KAL0

  14. XM_039110591.2 → XP_038966519.1  coiled-coil domain-containing protein 17 isoform X6

    UniProtKB/TrEMBL
    A0A0G2KAL0

  15. XM_039110592.1 → XP_038966520.1  coiled-coil domain-containing protein 17 isoform X12

RNA

  1. XR_005504525.2 RNA Sequence

  2. XR_005504522.2 RNA Sequence

  3. XR_005504527.2 RNA Sequence

  4. XR_005504526.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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