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C1s-ps1 complement C1s, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 500313, updated on 17-Aug-2024

Summary

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Official Symbol
C1s-ps1provided by RGD
Official Full Name
complement C1s, pseudogene 1provided by RGD
Primary source
RGD:1561715
See related
AllianceGenome:RGD:1561715
Gene type
pseudo
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561715
Expression
Biased expression in Liver (RPKM 634.5), Spleen (RPKM 254.9) and 8 other tissues See more
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Genomic context

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See C1s-ps1 in Genome Data Viewer
Location:
4q42
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (158744584..158746895, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (157059237..157061211, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (156728192..156730309, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene vomeronasal 2 receptor, 51 Neighboring gene vomeronasal 2 receptor, 52 Neighboring gene uncharacterized LOC134486636 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene CD163 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    158744584..158746895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
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