Znrd1as1 ZNRD1 antisense RNA 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Znrd1as1provided by RGD
Official Full Name: ZNRD1 antisense RNA 1provided by RGD
Primary source: RGD:1564067
See related: EnsemblRapid:ENSRNOG00000077011 AllianceGenome:RGD:1564067
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Tcte4; Tctex4; Znrd1as; RGD1564067
Expression: Biased expression in Testes (RPKM 79.5), Adrenal (RPKM 42.7) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 20p12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	20	NC_086038.1 (1593908..1600355, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	20	NC_051355.1 (1568105..1595084, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (2082259..2088413, complement)

Chromosome 20 - NC_086038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: ZNRD1 antisense RNA 1

Names: t-complex testis-expressed 4; t-complex-associated testis expressed 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001395156.1 → NP_001382085.1 ZNRD1 antisense RNA 1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000020

UniProtKB/TrEMBL

F1LQH1

Related

ENSRNOP00000098149.2, ENSRNOT00000120449.2

Conserved Domains (1) summary

pfam17658
Location:10 → 155

DUF5520; Family of unknown function (DUF5520)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086038.1 Reference GRCr8

Range

1593908..1600355 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_008772699.4 → XP_008770921.1 ZNRD1 antisense RNA 1 isoform X2

UniProtKB/TrEMBL

F1LQH1

Conserved Domains (1) summary

pfam17658
Location:10 → 155

DUF5520; Family of unknown function (DUF5520)
XM_006255877.5 → XP_006255939.1 ZNRD1 antisense RNA 1 isoform X1

UniProtKB/TrEMBL

A0A8I6A0A7

Related

ENSRNOP00000085520.1, ENSRNOT00000085106.4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001166303.1: Suppressed sequence

Description

NM_001166303.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.