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Cfap46 cilia and flagella associated protein 46 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499282, updated on 2-Nov-2024

Summary

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Symbol
Cfap46provided by RGD
Full Name
cilia and flagella associated protein 46provided by RGD
Primary source
RGD:1559985
See related
EnsemblRapid:ENSRNOG00000027374 AllianceGenome:RGD:1559985
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Ttc40; RGD1559985; AABR07005985.1
Summary
Predicted to be involved in axoneme assembly and cilium movement involved in cell motility. Orthologous to human CFAP46 (cilia and flagella associated protein 46). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 57.6), Lung (RPKM 29.3) and 1 other tissue See more
Orthologs
human mouse all
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Genomic context

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See Cfap46 in Genome Data Viewer
Location:
1q41
Exon count:
65
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (203832818..203912389, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (194403212..194482790, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (211943436..212022287, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485194 Neighboring gene inositol polyphosphate-5-phosphatase A Neighboring gene NK6 homeobox 2 Neighboring gene uncharacterized LOC134485197 Neighboring gene uncharacterized LOC134484917

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in axoneme assembly IEA
Inferred from Electronic Annotation
more info
  
involved_in cilium movement involved in cell motility IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cilia- and flagella-associated protein 46; similar to chromosome 10 open reading frame 92
Names
tetratricopeptide repeat domain 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    203832818..203912389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063281010.1 → XP_063137080.1  cilia- and flagella-associated protein 46 isoform X2

    UniProtKB/TrEMBL
    M0R6H6

  2. XM_063281014.1 → XP_063137084.1  cilia- and flagella-associated protein 46 isoform X6

  3. XM_063281011.1 → XP_063137081.1  cilia- and flagella-associated protein 46 isoform X3

  4. XM_063281008.1 → XP_063137078.1  cilia- and flagella-associated protein 46 isoform X1

    UniProtKB/TrEMBL
    D3Z8S9
    Related
    ENSRNOP00000031025.3, ENSRNOT00000029027.6

  5. XM_063281012.1 → XP_063137082.1  cilia- and flagella-associated protein 46 isoform X4

  6. XM_063281016.1 → XP_063137086.1  cilia- and flagella-associated protein 46 isoform X10

  7. XM_063281013.1 → XP_063137083.1  cilia- and flagella-associated protein 46 isoform X5

  8. XM_063281015.1 → XP_063137085.1  cilia- and flagella-associated protein 46 isoform X7

  9. XM_039101249.2 → XP_038957177.1  cilia- and flagella-associated protein 46 isoform X8

  10. XM_039101251.2 → XP_038957179.1  cilia- and flagella-associated protein 46 isoform X9

    UniProtKB/TrEMBL
    A6HXC3

RNA

  1. XR_010063190.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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