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Msantd5 Myb/SANT DNA binding domain containing 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 497899, updated on 9-Dec-2024

Summary

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Official Symbol
Msantd5provided by RGD
Official Full Name
Myb/SANT DNA binding domain containing 5provided by RGD
Primary source
RGD:1561674
See related
EnsemblRapid:ENSRNOG00000022555 AllianceGenome:RGD:1561674
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human MSANTD5 (Myb/SANT DNA binding domain containing 5). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Testes (RPKM 328.6), Liver (RPKM 40.9) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Msantd5 in Genome Data Viewer
Location:
10q22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (36017911..36026389, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (35516926..35526742, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (36709018..36717989, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene Myb/SANT DNA binding domain containing 5 like 1 Neighboring gene putative uncharacterized protein MSANTD5 Neighboring gene CDC-like kinase 4 Neighboring gene collagen type XXIII alpha 1 chain Neighboring gene uncharacterized LOC120095095 Neighboring gene uncharacterized LOC134480786

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Myb/SANT DNA binding domain containing 5; myb/SANT DNA binding domain containing 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017472.1 → NP_001017472.1  Myb/SANT DNA binding domain containing 5

    See identical proteins and their annotated locations for NP_001017472.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079296
    UniProtKB/TrEMBL
    A6HE45, Q6AXV8
    Related
    ENSRNOP00000034675.4, ENSRNOT00000038838.5

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    36017911..36026389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063269604.1 → XP_063125674.1  myb/SANT DNA binding domain containing 5 isoform X1

    UniProtKB/TrEMBL
    A6HE45

  2. XM_063269607.1 → XP_063125677.1  myb/SANT DNA binding domain containing 5 isoform X2

    UniProtKB/TrEMBL
    A6HE45, F7F237

  3. XM_039086559.2 → XP_038942487.1  myb/SANT DNA binding domain containing 5 isoform X3

    UniProtKB/TrEMBL
    A6HE45, Q6AXV8

  4. XM_063269606.1 → XP_063125676.1  myb/SANT DNA binding domain containing 5 isoform X2

    UniProtKB/TrEMBL
    A6HE45, F7F237

  5. XM_006246312.3 → XP_006246374.1  myb/SANT DNA binding domain containing 5 isoform X1

    See identical proteins and their annotated locations for XP_006246374.1

    UniProtKB/TrEMBL
    A6HE45
Nucleotide Protein Strain
Heading Accession and Version

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