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tspan5b tetraspanin 5b [ Danio rerio (zebrafish) ]

Gene ID: 494048, updated on 9-Dec-2024

Summary

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Official Symbol
tspan5bprovided by ZNC
Official Full Name
tetraspanin 5bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041212-12
See related
Ensembl:ENSDARG00000070449 AllianceGenome:ZFIN:ZDB-GENE-041212-12
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101855
Summary
Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human TSPAN5 (tetraspanin 5). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See tspan5b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (11977426..11994710)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (11290626..11307910)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495029 Neighboring gene sorting nexin 8b Neighboring gene G protein-coupled receptor kinase 4 Neighboring gene solute carrier family 24 member 2 Neighboring gene uncharacterized LOC137495449

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Efficient ligase 3-dependent microhomology-mediated end joining repair of DNA double-strand breaks in zebrafish embryos. He MD, et al. Mutat Res, 2015 Oct. PMID 26318124
  2. Death receptors DR6 and TROY regulate brain vascular development. Tam SJ, et al. Dev Cell, 2012 Feb 14. PMID 22340501
  3. Comparative evolutionary genomics of medaka and three-spined stickleback fabp2a and fabp2b genes with fabp2 of zebrafish. Parmar MB, et al. Genome, 2013 Jan. PMID 23379336
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC494048

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008591.1 → NP_001008591.1  uncharacterized protein LOC494048

    See identical proteins and their annotated locations for NP_001008591.1

    Status: PREDICTED

    Source sequence(s)
    BC086749
    UniProtKB/TrEMBL
    B2GQR4, F6NWK5, Q5PR95
    Related
    ENSDARP00000094176.4, ENSDART00000103399.6
    Conserved Domains (2) summary
    cd03159
    Location:113 → 233
    TM4SF9_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:14 → 261
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    11977426..11994710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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