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si:dkey-184a18.5 si:dkey-184a18.5 [ Danio rerio (zebrafish) ]

Gene ID: 492754, updated on 9-Dec-2024

Summary

Official Symbol
si:dkey-184a18.5provided by ZNC
Official Full Name
si:dkey-184a18.5provided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-187
See related
Ensembl:ENSDARG00000095594 AllianceGenome:ZFIN:ZDB-GENE-091204-187
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7154516
Summary
Is expressed in chondrocranium and head mesenchyme. Orthologous to human C5orf63 (chromosome 5 open reading frame 63). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See si:dkey-184a18.5 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (16062125..16067194, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (16104018..16109108, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene phosphorylated adaptor for RNA export Neighboring gene lamin B1 Neighboring gene multiple EGF-like-domains 10 Neighboring gene proline-rich coiled-coil 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386319.1NP_001373248.1  glutaredoxin-like protein

    Status: VALIDATED

    Source sequence(s)
    CR396586
    UniProtKB/TrEMBL
    A0A8M1RM87, E9QBC6
    Related
    ENSDARP00000116545.1, ENSDART00000141868.2
    Conserved Domains (1) summary
    pfam05768
    Location:2699
    DUF836; Glutaredoxin-like domain (DUF836)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    16062125..16067194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)