U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ftr72 finTRIM family, member 72 [ Danio rerio (zebrafish) ]

Gene ID: 492515, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
ftr72provided by ZNC
Official Full Name
finTRIM family, member 72provided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-86
See related
Ensembl:ENSDARG00000026704 AllianceGenome:ZFIN:ZDB-GENE-041114-86
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:103602
Summary
Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasm. Orthologous to human TRIM29 (tripartite motif containing 29). [provided by Alliance of Genome Resources, Dec 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ftr72 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (41752335..41756507, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (41794503..41799284, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 77 Neighboring gene finTRIM family, member 88 Neighboring gene finTRIM family, member 73 Neighboring gene finTRIM family, member 91 Neighboring gene solute carrier family 25 member 36b Neighboring gene uncharacterized LOC137487677 Neighboring gene 2-phosphoxylose phosphatase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Bioinformatics and expression analysis of finTRIM genes in grass carp, Ctenopharyngodon idella. Luo K, et al. Fish Shellfish Immunol, 2017 Jul. PMID 28476675
  2. FTR33, a member of fish-specific TRIM (finTRIM) subfamily, regulates negatively type I IFN antiviral immunity in zebrafish. Huang L, et al. Dev Comp Immunol, 2023 May. PMID 36801427
  3. Fish antiviral tripartite motif (TRIM) proteins. Langevin C, et al. Fish Shellfish Immunol, 2019 Mar. PMID 30550990
  4. A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. van der Aa LM, et al. BMC Biol, 2009 Feb 5. PMID 19196451, Free PMC Article
  5. Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish. Boudinot P, et al. PLoS One, 2011. PMID 21789205, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
finTRIM family, member 72

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007387.2 → NP_001007388.2  finTRIM family, member 72

    See identical proteins and their annotated locations for NP_001007388.2

    Status: VALIDATED

    Source sequence(s)
    CR853294
    UniProtKB/TrEMBL
    A0A8M1N397, F1R9Z3
    Related
    ENSDARP00000090075.3, ENSDART00000099302.4
    Conserved Domains (3) summary
    pfam00643
    Location:145 → 184
    zf-B_box; B-box zinc finger
    pfam15227
    Location:15 → 57
    zf-C3HC4_4; zinc finger of C3HC4-type, RING
    cd16040
    Location:369 → 540
    SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    41752335..41756507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools