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lrrc20 leucine rich repeat containing 20 [ Danio rerio (zebrafish) ]

Gene ID: 492485, updated on 9-Dec-2024

Summary

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Official Symbol
lrrc20provided by ZNC
Official Full Name
leucine rich repeat containing 20provided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-49
See related
Ensembl:ENSDARG00000105018 AllianceGenome:ZFIN:ZDB-GENE-041114-49
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:103699
Summary
Orthologous to human LRRC20 (leucine rich repeat containing 20). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See lrrc20 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (48214603..48240131)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (48304852..48330365)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene phosphatase domain containing paladin 1a Neighboring gene neuropeptide FF receptor 1-like Neighboring gene nodal-related 2 Neighboring gene inorganic pyrophosphatase 1a Neighboring gene secretion associated, Ras related GTPase 1Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The evolutionary origin of nodal-related genes in teleosts. Fan X, et al. Dev Genes Evol, 2007 Dec. PMID 17992538
  2. A high-resolution mRNA expression time course of embryonic development in zebrafish. White RJ, et al. Elife, 2017 Nov 16. PMID 29144233, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007357.2 → NP_001007358.2  leucine-rich repeat-containing protein 20

    Status: VALIDATED

    Source sequence(s)
    CABZ01080691, FO704685
    UniProtKB/TrEMBL
    A0A0R4IPB8, A0A8M2BKA4, Q5U3D7
    Related
    ENSDARP00000150301.1, ENSDART00000187369.1

  2. NM_001430864.1 → NP_001417793.1  leucine-rich repeat-containing protein 20

    Status: VALIDATED

    Source sequence(s)
    CABZ01080691, FO704685
    UniProtKB/TrEMBL
    A0A0R4IPB8, A0A8M2BKA4, Q5U3D7

  3. NM_001430865.1 → NP_001417794.1  leucine-rich repeat-containing protein 20

    Status: VALIDATED

    Source sequence(s)
    CABZ01080691, FO704685
    UniProtKB/TrEMBL
    A0A0R4IPB8, A0A8M2BKA4, Q5U3D7

  4. NM_001430866.1 → NP_001417795.1  leucine-rich repeat-containing protein 20

    Status: VALIDATED

    Source sequence(s)
    CABZ01080691, FO704685
    UniProtKB/TrEMBL
    A0A0R4IPB8, A0A8M2BKA4, Q5U3D7

  5. NM_001430867.1 → NP_001417796.1  leucine-rich repeat-containing protein 20

    Status: VALIDATED

    Source sequence(s)
    CABZ01080691, FO704685
    UniProtKB/TrEMBL
    A0A0R4IPB8, A0A8M2BKA4, Q5U3D7
    Related
    ENSDARP00000136255.1, ENSDART00000164392.3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    48214603..48240131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480061.2 → XP_021335736.1  leucine-rich repeat-containing protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q8A6
    Conserved Domains (2) summary
    sd00031
    Location:22 → 47
    LRR_1; leucine-rich repeat [structural motif]
    cl26018
    Location:7 → 130
    NEL; C-terminal novel E3 ligase, LRR-interacting

  2. XM_021480058.2 → XP_021335733.1  leucine-rich repeat-containing protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q8A6
    Conserved Domains (2) summary
    sd00031
    Location:22 → 47
    LRR_1; leucine-rich repeat [structural motif]
    cl26018
    Location:7 → 130
    NEL; C-terminal novel E3 ligase, LRR-interacting

  3. XM_021480057.2 → XP_021335732.1  leucine-rich repeat-containing protein 20 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PW68
    Conserved Domains (2) summary
    sd00031
    Location:34 → 59
    LRR_1; leucine-rich repeat [structural motif]
    cl26018
    Location:6 → 142
    NEL; C-terminal novel E3 ligase, LRR-interacting

  4. XM_021480055.2 → XP_021335730.1  leucine-rich repeat-containing protein 20 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QMF3
    Conserved Domains (2) summary
    sd00031
    Location:51 → 76
    LRR_1; leucine-rich repeat [structural motif]
    cl26018
    Location:23 → 159
    NEL; C-terminal novel E3 ligase, LRR-interacting

  5. XM_068224545.1 → XP_068080646.1  leucine-rich repeat-containing protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q8A6

  6. XM_021480059.2 → XP_021335734.1  leucine-rich repeat-containing protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q8A6
    Conserved Domains (2) summary
    sd00031
    Location:22 → 47
    LRR_1; leucine-rich repeat [structural motif]
    cl26018
    Location:7 → 130
    NEL; C-terminal novel E3 ligase, LRR-interacting

  7. XM_021480060.2 → XP_021335735.1  leucine-rich repeat-containing protein 20 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q8A6
    Conserved Domains (2) summary
    sd00031
    Location:22 → 47
    LRR_1; leucine-rich repeat [structural motif]
    cl26018
    Location:7 → 130
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein Strain
Heading Accession and Version

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