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nufip2 nuclear FMR1 interacting protein 2 [ Danio rerio (zebrafish) ]

Gene ID: 492366, updated on 9-Dec-2024

Summary

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Official Symbol
nufip2provided by ZNC
Official Full Name
nuclear FMR1 interacting protein 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-041111-7
See related
Ensembl:ENSDARG00000069066 AllianceGenome:ZFIN:ZDB-GENE-041111-7
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7136583
Summary
Predicted to enable RNA binding activity. Predicted to be active in cytoplasmic stress granule and nucleoplasm. Orthologous to human NUFIP2 (nuclear FMR1 interacting protein 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See nufip2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (30127315..30137780)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (30246222..30257039)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene sialate:O-sulfotransferase 1 Neighboring gene class A basic helix-loop-helix protein 9-like Neighboring gene uncharacterized LOC137487766 Neighboring gene nemo-like kinase, type 2 Neighboring gene LYR motif containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of the tbx6/16 subfamily genes in vertebrates: insights from zebrafish. Ahn D, et al. Mol Biol Evol, 2012 Dec. PMID 22915831
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasmic stress granule IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
FMR1-interacting protein NUFIP2; nuclear FMR1 interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    30127315..30137780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002664642.6 → XP_002664688.1  FMR1-interacting protein NUFIP2

    UniProtKB/TrEMBL
    A0A8M1RRG3, E7FCK6
    Related
    ENSDARP00000090987.3, ENSDART00000100214.5
    Conserved Domains (1) summary
    pfam15293
    Location:45 → 630
    NUFIP2; Nuclear fragile X mental retardation-interacting protein 2
Nucleotide Protein Strain
Heading Accession and Version

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