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Bka Bekka [ Drosophila melanogaster (fruit fly) ]

Gene ID: 46032, updated on 4-Jan-2025

Summary

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Official Symbol
Bkaprovided by FlyBase
Official Full Name
Bekkaprovided by FlyBase
Primary source
FLYBASE:FBgn0010520
Locus tag
Dmel_CG4539
See related
AllianceGenome:FB:FBgn0010520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE14949; bka; CG4539; Dmel\CG4539; l(2)02695; mip
Summary
Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in imaginal disc; larval brain; and organism. Orthologous to human FCF1 (FCF1 rRNA-processing protein). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See Bka in Genome Data Viewer
Location:
30E1-30E1; 2-37 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9895287..9896104)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9895287..9896104)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene U snoRNA host gene 2 Neighboring gene Ribosomal protein S2 Neighboring gene Mucin 30E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Partial inhibition of the overactivated Ku80-dependent DNA repair pathway rescues neurodegeneration in C9ORF72-ALS/FTD. Lopez-Gonzalez R, et al. Proc Natl Acad Sci U S A, 2019 May 7. PMID 31019093, Free PMC Article
  2. Altered levels of hsromega lncRNAs further enhance Ras signaling during ectopically activated Ras induced R7 differentiation in Drosophila. Ray M, et al. Gene Expr Patterns, 2019 Sep. PMID 31096022
  3. Transcriptional response to dietary restriction in Drosophila melanogaster. Ding F, et al. J Insect Physiol, 2014 Oct. PMID 24819200, Free PMC Article
  4. The pentameric nucleoplasmin fold is present in Drosophila FKBP39 and a large number of chromatin-related proteins. Edlich-Muth C, et al. J Mol Biol, 2015 May 22. PMID 25813344, Free PMC Article
  5. Identification of neural outgrowth genes using genome-wide RNAi. Sepp KJ, et al. PLoS Genet, 2008 Jul 4. PMID 18604272, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
bekka
Names
Bka-PA
CG4539-PA
missing imaginal precursors

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    9895287..9896104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_080128.5 → NP_524867.2  bekka [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_524867.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SZ77, Q9VL75
    Related
    FBpp0079470
    Conserved Domains (1) summary
    cd09864
    Location:58 → 192
    PIN_Fcf1; PIN domain of rRNA-processing protein, Fcf1 (Utp24, YDR339C), and other eukaryotic homologs
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VL75 Q9VL75

Gene LinkOut

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