dera deoxyribose-phosphate aldolase (putative) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: deraprovided by ZNC
Official Full Name: deoxyribose-phosphate aldolase (putative)provided by ZNC
Primary source: ZFIN:ZDB-GENE-041010-200
See related: Ensembl:ENSDARG00000005897 AllianceGenome:ZFIN:ZDB-GENE-041010-200
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:101610
Summary: Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process and deoxyribonucleotide catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including intermediate cell mass of mesoderm; liver; pronephric duct; retinal pigmented epithelium; and ventral mesoderm. Orthologous to human DERA (deoxyribose-phosphate aldolase). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (12755136..12766418, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (12756287..12767569, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables deoxyribose-phosphate aldolase activity	IBA Inferred from Biological aspect of Ancestor more info
enables deoxyribose-phosphate aldolase activity	IEA Inferred from Electronic Annotation more info
enables lyase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in carbohydrate catabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in deoxyribonucleotide catabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within deoxyribonucleotide catabolic process	IEA Inferred from Electronic Annotation more info
involved_in deoxyribose phosphate catabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: deoxyribose-phosphate aldolase

Names: 2-deoxyribose-5-phosphate aldolase homolog

NP_001006097.1

EC 4.1.2.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.