U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

syngr1a synaptogyrin 1a [ Danio rerio (zebrafish) ]

Gene ID: 450047, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
syngr1aprovided by ZNC
Official Full Name
synaptogyrin 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041010-169
See related
Ensembl:ENSDARG00000002564 AllianceGenome:ZFIN:ZDB-GENE-041010-169
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
syngr1; zgc:101712
Summary
Predicted to be located in membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Is expressed in nervous system; neural crest; optic vesicle; and pigment cell. Orthologous to human SYNGR1 (synaptogyrin 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See syngr1a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (21251627..21280373, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (21121079..21149857, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zgc:153968 Neighboring gene titin-cap (telethonin) Neighboring gene family with sequence similarity 171 member A2a Neighboring gene integrin, alpha 2b

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. SMN deficiency alters Nrxn2 expression and splicing in zebrafish and mouse models of spinal muscular atrophy. See K, et al. Hum Mol Genet, 2014 Apr 1. PMID 24218366
  2. Gene co-expression network analysis reveals mechanisms underlying ozone-induced carbamazepine toxicity in zebrafish (Danio rerio) embryos. Pohl J, et al. Chemosphere, 2021 Aug. PMID 34088109
  3. Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants. White RJ, et al. Elife, 2022 Feb 17. PMID 35175196, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in neuromuscular junction IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in synaptic vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
synaptogyrin-1a
Names
synaptogyrin 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006067.1 → NP_001006067.1  synaptogyrin-1a

    See identical proteins and their annotated locations for NP_001006067.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083255
    UniProtKB/TrEMBL
    B2GTJ6, F6P9B9, Q5XJP3
    Related
    ENSDARP00000005611.6, ENSDART00000003939.7
    Conserved Domains (1) summary
    pfam01284
    Location:19 → 166
    MARVEL; Membrane-associating domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    21251627..21280373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171578.5 → XP_005171635.1  synaptogyrin-1a isoform X1

    UniProtKB/TrEMBL
    A0A8M2BIW4
    Conserved Domains (1) summary
    pfam01284
    Location:19 → 166
    MARVEL; Membrane-associating domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous