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kif20ba kinesin family member 20Ba [ Danio rerio (zebrafish) ]

Gene ID: 449979, updated on 9-Dec-2024

Summary

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Official Symbol
kif20baprovided by ZNC
Official Full Name
kinesin family member 20Baprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041111-213
See related
Ensembl:ENSDARG00000071009 AllianceGenome:ZFIN:ZDB-GENE-041111-213
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7142427; im:7142489; im:7144435
Summary
Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Predicted to be involved in microtubule-based movement. Predicted to be located in cytoskeleton. Predicted to be part of kinesin complex. Predicted to be active in cytoplasm; microtubule; and nucleus. Orthologous to human KIF20B (kinesin family member 20B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See kif20ba in Genome Data Viewer
Location:
chromosome: 17
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (23471034..23508704)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (23450974..23489142)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene polycomb group ring finger 5a Neighboring gene ankyrin repeat domain 1a (cardiac muscle) Neighboring gene 5-hydroxytryptamine (serotonin) receptor 7a Neighboring gene zgc:65997

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The splicing factor DHX38 enables retinal development through safeguarding genome integrity. Sun K, et al. iScience, 2023 Nov 17. PMID 37867960, Free PMC Article
  2. Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise. Boskovic S, et al. PLoS One, 2018. PMID 30252882, Free PMC Article
  3. Dhx38 is required for the maintenance and differentiation of erythro-myeloid progenitors and hematopoietic stem cells by alternative splicing. Tu J, et al. Development, 2022 Sep 1. PMID 35929537
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule motor activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within microtubule-based movement IEA
Inferred from Electronic Annotation
more info
  
involved_in system development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
kinesin-like protein KIF20B
Names
M-phase phosphoprotein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    23471034..23508704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003200345.6 → XP_003200393.2  kinesin-like protein KIF20B isoform X1

    UniProtKB/TrEMBL
    A0A8M1RFH9
    Conserved Domains (3) summary
    cl22853
    Location:42 → 458
    Motor_domain; Myosin and Kinesin motor domain
    cl25732
    Location:548 → 1295
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27539
    Location:1169 → 1427
    Peptidase_M23; Peptidase family M23

  2. XM_005158528.5 → XP_005158585.1  kinesin-like protein KIF20B isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q6L2, E7FAN6, X1WCP2
    Related
    ENSDARP00000127989.1, ENSDART00000154716.3
    Conserved Domains (2) summary
    cl22853
    Location:42 → 458
    Motor_domain; Myosin and Kinesin motor domain
    cl25732
    Location:548 → 1295
    SMC_N; RecF/RecN/SMC N terminal domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394988.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    489037..526707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473144.2 → XP_021328819.1  kinesin-like protein KIF20B isoform X1

    UniProtKB/TrEMBL
    A0A8M1RFH9
    Conserved Domains (3) summary
    cl22853
    Location:42 → 458
    Motor_domain; Myosin and Kinesin motor domain
    cl25732
    Location:548 → 1295
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27539
    Location:1169 → 1427
    Peptidase_M23; Peptidase family M23

  2. XM_021473145.2 → XP_021328820.1  kinesin-like protein KIF20B isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q6L2, E7FAN6, X1WCP2
    Conserved Domains (2) summary
    cl22853
    Location:42 → 458
    Motor_domain; Myosin and Kinesin motor domain
    cl25732
    Location:548 → 1295
    SMC_N; RecF/RecN/SMC N terminal domain

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395331.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    51915..89585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474376.2 → XP_021330051.1  kinesin-like protein KIF20B isoform X1

    UniProtKB/TrEMBL
    A0A8M1RFH9
    Conserved Domains (3) summary
    cl22853
    Location:42 → 458
    Motor_domain; Myosin and Kinesin motor domain
    cl25732
    Location:548 → 1295
    SMC_N; RecF/RecN/SMC N terminal domain
    cl27539
    Location:1169 → 1427
    Peptidase_M23; Peptidase family M23

  2. XM_021474377.2 → XP_021330052.1  kinesin-like protein KIF20B isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q6L2, E7FAN6, X1WCP2
    Conserved Domains (2) summary
    cl22853
    Location:42 → 458
    Motor_domain; Myosin and Kinesin motor domain
    cl25732
    Location:548 → 1295
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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