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kansl2 KAT8 regulatory NSL complex subunit 2 [ Danio rerio (zebrafish) ]

Gene ID: 449817, updated on 9-Dec-2024

Summary

Official Symbol
kansl2provided by ZNC
Official Full Name
KAT8 regulatory NSL complex subunit 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-041010-67
See related
Ensembl:ENSDARG00000056318 AllianceGenome:ZFIN:ZDB-GENE-041010-67
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
id:ibd2059; wu:fb75c02; zgc:103534
Summary
Predicted to act upstream of or within chromatin organization. Predicted to be located in mitochondrion and nucleus. Predicted to be part of histone acetyltransferase complex. Is expressed in notochord. Orthologous to human KANSL2 (KAT8 regulatory NSL complex subunit 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See kansl2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (24599031..24609494)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (24672252..24682953)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 240a Neighboring gene mutL homolog 3 (E. coli) Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene NCK-associated protein 5-like Neighboring gene microRNA 26b Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
KAT8 regulatory NSL complex subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005990.1NP_001005990.1  KAT8 regulatory NSL complex subunit 2

    See identical proteins and their annotated locations for NP_001005990.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083416
    UniProtKB/TrEMBL
    A0A8M1N2N8, Q5XJ88
    Related
    ENSDARP00000105294.2, ENSDART00000126510.4
    Conserved Domains (1) summary
    pfam13891
    Location:2892
    zf-C3Hc3H; Potential DNA-binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    24599031..24609494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068216740.1XP_068072841.1  KAT8 regulatory NSL complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B8Z9, A9JTE3
  2. XM_005162163.5XP_005162220.1  KAT8 regulatory NSL complex subunit 2 isoform X1

    See identical proteins and their annotated locations for XP_005162220.1

    UniProtKB/TrEMBL
    A0A8M2B8Z9, A9JTE3
    Related
    ENSDARP00000073257.3, ENSDART00000078796.5
    Conserved Domains (1) summary
    pfam13891
    Location:2892
    zf-C3Hc3H; Potential DNA-binding domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395151.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    219367..227442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)