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zgc:101858 zgc:101858 [ Danio rerio (zebrafish) ]

Gene ID: 449555, updated on 9-Dec-2024

Summary

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Official Symbol
zgc:101858provided by ZNC
Official Full Name
zgc:101858provided by ZNC
Primary source
ZFIN:ZDB-GENE-040927-13
See related
Ensembl:ENSDARG00000035129 AllianceGenome:ZFIN:ZDB-GENE-040927-13
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable oxidoreductase activity. Is expressed in several structures, including alar plate midbrain region; eye; immature eye; midbrain; and pectoral fin. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See zgc:101858 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (64856873..64861295)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (64175502..64180131)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495656 Neighboring gene leucine rich repeat containing 8 VRAC subunit Ab Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 3 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene keratin, type 1, gene c5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene expression markers in the zebrafish embryo reflect a hepatotoxic response in animal models and humans. Driessen M, et al. Toxicol Lett, 2014 Oct 1. PMID 25064622
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC449555

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005597.1 → NP_001005597.1  uncharacterized protein LOC449555

    See identical proteins and their annotated locations for NP_001005597.1

    Status: PREDICTED

    Source sequence(s)
    BC081417
    UniProtKB/TrEMBL
    Q642M8
    Related
    ENSDARP00000050862.3, ENSDART00000050863.4
    Conserved Domains (2) summary
    cd05364
    Location:12 → 262
    SDR_c11; classical (c) SDR, subgroup 11
    PRK05653
    Location:11 → 260
    fabG; 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    64856873..64861295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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