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sdf2l1 stromal cell-derived factor 2-like 1 [ Danio rerio (zebrafish) ]

Gene ID: 445275, updated on 9-Dec-2024

Summary

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Official Symbol
sdf2l1provided by ZNC
Official Full Name
stromal cell-derived factor 2-like 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040808-46
See related
Ensembl:ENSDARG00000035631 AllianceGenome:ZFIN:ZDB-GENE-040808-46
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92449; wu:fc55b04
Summary
Is expressed in hatching gland; nervous system; notochord; otic vesicle; and polster. Orthologous to human SDF2L1 (stromal cell derived factor 2 like 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See sdf2l1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (13308531..13315649, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (12808314..12815432, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene microRNA 454b Neighboring gene microRNA 130b Neighboring gene YdjC chitooligosaccharide deacetylase homolog Neighboring gene ubiquitin-conjugating enzyme E2L 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Primordial germ cell migration in the yellowtail kingfish (Seriola lalandi) and identification of stromal cell-derived factor 1. Fernández JA, et al. Gen Comp Endocrinol, 2015 Mar 1. PMID 25708429
  2. RNA-sequencing analysis of TCDD-induced responses in zebrafish liver reveals high relatedness to in vivo mammalian models and conserved biological pathways. Li ZH, et al. PLoS One, 2013. PMID 24204792, Free PMC Article
  3. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
stromal cell-derived factor 2-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003730.1 → NP_001003730.2  stromal cell-derived factor 2-like protein 1 precursor

    Status: VALIDATED

    Source sequence(s)
    BC078401
    UniProtKB/TrEMBL
    A0A8M1N1N9, A2BIR7, Q6AZB5
    Related
    ENSDARP00000113867.1, ENSDART00000143364.2
    Conserved Domains (1) summary
    smart00472
    Location:93 → 148
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    13308531..13315649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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