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mrps23 mitochondrial ribosomal protein S23 [ Danio rerio (zebrafish) ]

Gene ID: 445221, updated on 4-Jan-2025

Summary

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Official Symbol
mrps23provided by ZNC
Official Full Name
mitochondrial ribosomal protein S23provided by ZNC
Primary source
ZFIN:ZDB-GENE-040801-134
See related
Ensembl:ENSDARG00000033973 AllianceGenome:ZFIN:ZDB-GENE-040801-134
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fa18c12; zgc:100967
Summary
Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 46. Orthologous to human MRPS23 (mitochondrial ribosomal protein S23). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See mrps23 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (30350088..30354786)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (30468677..30474045)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene LYR motif containing 9 Neighboring gene uncharacterized LOC103908846 Neighboring gene nitric oxide synthase 2b, inducible Neighboring gene musashi RNA-binding protein 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein mS23

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003615.1 → NP_001003615.1  small ribosomal subunit protein mS23

    See identical proteins and their annotated locations for NP_001003615.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077090
    UniProtKB/TrEMBL
    Q6DEM0
    Related
    ENSDARP00000044451.5, ENSDART00000044452.6
    Conserved Domains (1) summary
    pfam10484
    Location:2 → 130
    MRP-S23; Mitochondrial ribosomal protein S23

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    30350088..30354786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157688.5 → XP_005157745.1  small ribosomal subunit protein mS23 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B4M6, E9QDB6
    Related
    ENSDARP00000123077.1, ENSDART00000135632.3
    Conserved Domains (1) summary
    pfam10484
    Location:2 → 130
    MRP-S23; Mitochondrial ribosomal protein S23
Nucleotide Protein Strain
Heading Accession and Version

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