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tfip11 tuftelin interacting protein 11 [ Danio rerio (zebrafish) ]

Gene ID: 436994, updated on 4-Jan-2025

Summary

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Official Symbol
tfip11provided by ZNC
Official Full Name
tuftelin interacting protein 11provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-479
See related
Ensembl:ENSDARG00000056932 AllianceGenome:ZFIN:ZDB-GENE-040718-479
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd15a02; zgc:86644; wu:fd15a02
Summary
Predicted to enable nucleic acid binding activity. Predicted to be involved in spliceosomal complex disassembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2-type post-mRNA release spliceosomal complex. Orthologous to human TFIP11 (tuftelin interacting protein 11). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See tfip11 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (17848992..17866097, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (17922646..17939754, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene Rho family GTPase 1a Neighboring gene DNA primase subunit 1 Neighboring gene small nucleolar RNA SNORD59 Neighboring gene small nucleolar RNA SNORD59 Neighboring gene nascent polypeptide associated complex subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants. White RJ, et al. Elife, 2022 Feb 17. PMID 35175196, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in spliceosomal complex disassembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U2-type post-mRNA release spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
  
part_of spliceosomal complex ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
tuftelin-interacting protein 11
Names
STIP-1
septin and tuftelin-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002721.1 → NP_001002721.1  tuftelin-interacting protein 11

    See identical proteins and their annotated locations for NP_001002721.1

    Status: PROVISIONAL

    Source sequence(s)
    BC075755
    UniProtKB/Swiss-Prot
    Q6DI35
    UniProtKB/TrEMBL
    A0A8M3AMR2, F1QQ02
    Related
    ENSDARP00000073961.4, ENSDART00000079506.5
    Conserved Domains (3) summary
    pfam01585
    Location:148 → 192
    G-patch; G-patch domain
    pfam07842
    Location:390 → 659
    GCFC; GC-rich sequence DNA-binding factor-like protein
    pfam12457
    Location:23 → 103
    TIP_N; Tuftelin interacting protein N terminal

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    17848992..17866097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DI35.1 GenPept UniProtKB/Swiss-Prot:Q6DI35

Gene LinkOut

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