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atxn7l2b ataxin 7-like 2b [ Danio rerio (zebrafish) ]

Gene ID: 436928, updated on 4-Jan-2025

Summary

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Official Symbol
atxn7l2bprovided by ZNC
Official Full Name
ataxin 7-like 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-403
See related
Ensembl:ENSDARG00000056268 AllianceGenome:ZFIN:ZDB-GENE-040718-403
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
atxn7l2; zgc:92454; wu:fi36e12
Summary
Orthologous to human ATXN7L2 (ataxin 7 like 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See atxn7l2b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (25091380..25106682)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (25072241..25087543)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene sortilin 1b Neighboring gene synaptophysin-like 2b Neighboring gene adhesion molecule with Ig-like domain 1 Neighboring gene G protein-coupled receptor 61

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Requirement for zebrafish ataxin-7 in differentiation of photoreceptors and cerebellar neurons. Yanicostas C, et al. PLoS One, 2012. PMID 23226359, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ataxin-7-like protein 2b
Names
ataxin 7-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002655.2 → NP_001002655.2  ataxin-7-like protein 2b

    Status: VALIDATED

    Source sequence(s)
    BX470135
    UniProtKB/TrEMBL
    A0A8M1N0T8, A5PMH0
    Related
    ENSDARP00000117276.1, ENSDART00000143922.2
    Conserved Domains (1) summary
    pfam08313
    Location:221 → 277
    SCA7; SCA7, zinc-binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    25091380..25106682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_011016483.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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